Welcome to RADCamp 2023 - The Chicago Edition
August 21-23, 2023
Stanley Classroom
Field Museum of Natural History
Chicago, IL
Organisers, Instructors, and Facilitators
- Arianna Kuhn - Virginia Museum of Natural History
- Isaac Overcast - California Academy of Sciences
RADCamp Chicago 2023 Sponsored by:
Grainger Bioinformatics Center @ FMNH
Schedule (All times are Central Daylight; GMT-5)
| Times | Monday | Tuesday | Wednesday |
|---|---|---|---|
| 8:30-9:00 | N/A | Check-in & Recap Day 1 | Check-in & Recap Day 2 |
| 9:00-10:15 | N/A | RADSeq Data Assembly: ipyrad Part II | Open Work Session |
| 10:15-10:30 | N/A | Coffee Break | Coffee Break |
| 10:30-12:00 | N/A | Intro to Jupyter Notebooks | Open Work Session |
| 12:00-13:00 | Lunch | Lunch | Lunch |
| 13:00-15:15 | Welcome & Introductions; Intro to RADSeq data; Software Setup | Population Genetic Analysis: PCA | N/A |
| 15:15-15:30 | Cofee Break | Coffee Break | N/A |
| 15:30-17:00 | RADSeq Data Quality Control: FASTQC; RADSeq Data Assembly: ipyrad Part I | Phylognetic Inference: RAxML | N/A |
Additional ipyrad analysis cookbooks
- Clustering analysis: STRUCTURE
- BPP - Bayesian inference under a multi-species coalescent model
- Bucky - Phylogenetic concordance analysis
- ABBA-BABA - Admixture analysis
RADCamp Chicago 2023 Group Photo
Acknowledgements
RADCamp tutorial contributors and instructors (over the years): Isaac Overcast, Deren Eaton, Sandra Hoffberg, Natalia Bayona-Vasquez, Mariana Vasconcellos, Laura Bertola, Josiah Kuja, Anhubab Kahn, Arianna Kuhn.