Welcome to RADCamp 2024 - The Chicago Edition
August 6-7, 2024
Botany Classroom
Field Museum of Natural History
Chicago, IL
Organisers, Instructors, and Facilitators
- Arianna Kuhn - Virginia Museum of Natural History
- Isaac Overcast - California Academy of Sciences
RADCamp Chicago 2024 Sponsored by:
Grainger Bioinformatics Center @ FMNH
Schedule (All times are Central Daylight; GMT-5)
| Times | Tuesday | Wednesday |
|---|---|---|
| 8:30-9:00 | Welcome & Introductions; Intro to RADSeq data; Software Setup | Check-in & Recap Day 1 |
| 9:00-10:15 | RADSeq Data Quality Control: FASTQC | Assemble mystery data in small groups & Intro to Jupyter Notebooks |
| 10:15-10:30 | Coffee Break | Coffee Break |
| 10:30-12:00 | RADSeq Data Assembly: ipyrad Part I | Take the group photo & Phylogenetic Inference: RAxML |
| 12:00-13:00 | Lunch | Lunch |
| 13:00-15:15 | RADSeq Data Assembly: ipyrad Part II | Population Genetic Analysis: PCA |
| 15:15-15:30 | N/A | Coffee Break |
| 15:30-17:00 | N/A | Open Work Session |
Additional ipyrad analysis cookbooks
- Clustering analysis: STRUCTURE
- BPP - Bayesian inference under a multi-species coalescent model
- Bucky - Phylogenetic concordance analysis
- ABBA-BABA - Admixture analysis
RADCamp Chicago 2024 Group Photo
Acknowledgements
RADCamp tutorial contributors and instructors (over the years): Isaac Overcast, Deren Eaton, Sandra Hoffberg, Natalia Bayona-Vasquez, Mariana Vasconcellos, Laura Bertola, Josiah Kuja, Anhubab Kahn, Arianna Kuhn.