RADCamp NYC 2019 Part II (Bioinformatics)
Day 2 (PM)
Meek snps file & Meek phylip file
Ignore everything below here!
Overview of the afternoon activities:
- Review results of STRUCTURE runs
- Overview of other available API mode tools
- Small group work focused on the pilot datasets
- Brief presentation of results of small group analysis
- Wrap-up & adjourn
Review results of STRUCTURE runs
Overview of other available API mode tools
- Tetrad - A Quartet-based species tree method
- Phylogenetic inference: RAxML
- Clustering analysis: PCA
- Clustering analysis: STRUCTURE
- BPP - Bayesian inference under a multi-species coalescent model
- Bucky - Phylogenetic concordance analysis
- ABBA-BABA - Admixture analysis
- [Demographic analysis (momi2)
Small group work focused on the pilot datasets
Break into groups around real data with the intention of running a few analyses, creating some plots and reporting the results to the rest of the group.
Results should be put in a google slides presentation in the RADCamp google drive folder.
Brief presentation of results of small group analysis
Please create a brief presentation (1-2 slides max) to highlight any interesting results you might have obtained in the Google Drive folder for draft results slides.
Wrap-up & adjourn
Put stuff here.