## The number of loci caught by each filter.
## ipyrad API location: [assembly].stats_dfs.s7_filters

                           total_filters applied_order retained_loci
total_prefiltered_loci                 0             0           314
filtered_by_rm_duplicates              1             1           313
filtered_by_max_indels                 4             4           309
filtered_by_max_SNPs                   0             0           309
filtered_by_max_shared_het            11            10           299
filtered_by_min_sample               219           219            80
total_filtered_loci                  235           234            80


## The number of loci recovered for each Sample.
## ipyrad API location: [assembly].stats_dfs.s7_samples

          sample_coverage
2023-017                9
2023-018                8
2023-019               49
2023-021               22
2023-024                9
2023-025                8
2023-027               10
2023-028                6
2023-034               20
2023-037               33
2023-038               28
2023-039               32
2023-040               56
2023-046               54
2023-050               38
2023-051               22
2023-056               40
2023-057               22
2023-059               50
2023-060               31
2023-061               44
2023-065               38
2023-066               57
2023-067               51


## The number of loci for which N taxa have data.
## ipyrad API location: [assembly].stats_dfs.s7_loci

    locus_coverage  sum_coverage
1                0             0
2                0             0
3                0             0
4               15            15
5                7            22
6                8            30
7                6            36
8                7            43
9                6            49
10               2            51
11               9            60
12               4            64
13               1            65
14               1            66
15               6            72
16               2            74
17               0            74
18               1            75
19               1            76
20               1            77
21               0            77
22               1            78
23               1            79
24               1            80


The distribution of SNPs (var and pis) per locus.
## var = Number of loci with n variable sites (pis + autapomorphies)
## pis = Number of loci with n parsimony informative site (minor allele in >1 sample)
## ipyrad API location: [assembly].stats_dfs.s7_snps
## The "reference" sample is included if present unless 'exclude_reference=True'

    var  sum_var  pis  sum_pis
0    43        0   63        0
1    15       15    8        8
2     6       27    6       20
3     2       33    1       23
4     2       41    1       27
5     4       61    0       27
6     0       61    0       27
7     4       89    1       34
8     1       97    0       34
9     0       97    0       34
10    0       97    0       34
11    1      108    0       34
12    0      108    0       34
13    0      108    0       34
14    1      122    0       34
15    0      122    0       34
16    0      122    0       34
17    0      122    0       34
18    0      122    0       34
19    0      122    0       34
20    1      142    0       34


## Final Sample stats summary
          state  reads_raw  reads_passed_filter  clusters_total  clusters_hidepth  hetero_est  error_est  reads_consens  loci_in_assembly
2023-017      7       3176                 3158            1878                26    0.019826   0.003704             19                 9
2023-018      7       2850                 2829            1697                19    0.029166   0.003721             12                 8
2023-019      7       7106                 7041            3157               102    0.017848   0.001674             82                49
2023-021      7       3319                 3290            1657                46    0.027768   0.003983             29                22
2023-024      7        781                  773             328                 9    0.001495   0.000419              9                 9
2023-025      7       1225                 1218             744                 8    0.002480   0.001565              8                 8
2023-027      7       1546                 1530             884                14    0.018982   0.000084             11                10
2023-028      7       1055                 1048             561                 9    0.009334   0.000433              8                 6
2023-034      7       7987                 7904            3939               117    0.025510   0.005369             74                20
2023-037      7       6478                 6414            3267                83    0.019842   0.001769             64                33
2023-038      7       6099                 6038            3202                80    0.019112   0.003285             60                28
2023-039      7       4666                 4621            2211                73    0.020491   0.003432             58                32
2023-040      7      12327                12234            5406               195    0.018907   0.003391            145                56
2023-046      7       9383                 9319            4505               138    0.020552   0.002892            104                54
2023-050      7      13409                13295            5538               186    0.022044   0.002892            128                38
2023-051      7       6291                 6233            3162                63    0.020752   0.003166             43                22
2023-056      7      12811                12685            5493               176    0.021828   0.002701            130                40
2023-057      7       6272                 6226            3354                65    0.024855   0.003904             43                22
2023-059      7       9982                 9886            4608               163    0.017915   0.002743            122                50
2023-060      7       6876                 6820            3552                89    0.021672   0.003089             65                31
2023-061      7       8683                 8614            3893               121    0.014451   0.003239             94                44
2023-065      7      15658                15506            7018               283    0.021019   0.003978            208                38
2023-066      7      28820                28598            9829               750    0.017883   0.002651            567                57
2023-067      7      23122                22927            9234               567    0.021307   0.004000            391                51


## Alignment matrix statistics:
snps matrix size: (24, 142), 75.67% missing sites.
sequence matrix size: (24, 14738), 62.64% missing sites.