Welcome to RadCamp 2024 - The Phoenix Edition
Saturday November 9, 2024
Room 108
Urban Systems Engineering Building
Arizona State University
Phoenix, AZ
Organisers, Instructors, and Facilitators
- Isaac Overcast (California Academy of Sciences)
- Natalie Payne (University of Arizona)
- Nathan Upham (Arizona State University)
Registration
Participation will be limited to 20 individuals. Registration for this edition of RADCamp is free-ish (there may be a nominal fee to cover coffee and snack). Please fill out this brief registration survey, so we can get a better idea of who will attend:
Register for RADCamp Phoenix 2024
Schedule
| Times | Sat Nov 9 |
|---|---|
| 08:30-09:00 | Check-in and Introductions |
| 09:00-10:00 | Intro to RADSeq & RADSeq QC |
| 10:00-10:15 | Coffee Break |
| 10:15-11:30 | ipyrad assembly: Part I & Part II |
| 11:30-12:30 | Assemble mystery data in small groups |
| 12:30-13:30 | Group Photo & Lunch |
| 13:30-15:30 | Jupyter notebooks & Clustering analysis: PCA |
| 15:30-15:45 | Coffee Break |
| 15:45-17:00 | Phylogenetic inference: RAxML |
Binder reinstall instructions
$ wget https://radcamp.github.io/Phoenix2024/binder-reinstall.sh
$ bash binder-reinstall.sh
Additional ipyrad analysis cookbooks
- Tetrad - A Quartet-based species tree method
- Phylogenetic inference: RAxML
- BPP - Bayesian inference under a multi-species coalescent model
- Bucky - Phylogenetic concordance analysis
- ABBA-BABA - Admixture analysis
Group Photo
Acknowledgements
RADCamp tutorial contributors and instructors (over the years): Isaac Overcast, Deren Eaton, Sandra Hoffberg, Natalia Bayona-Vasquez, Mariana Vasconcellos, Laura Bertola, Josiah Kuja, Anhubab Kahn, Arianna Kuhn.