Welcome to RadCamp 2019 - The Yale Edition
March 1, 2019
Yale Institute for Biospheric Studies
Center for Genetic Analyses of Biodiversity
21 Sachem Street
ESC 110
New Haven, CT
Organisers, Instructors, and Facilitators
- Isaac Overcast (CCNY)
Schedule
NB: This is a very preliminary schedule, so it is subject to change.
| Times | March 1 |
|---|---|
| 1:30-1:45 | ipyrad intro, check-in and refreshments |
| 2:00-2:30 | Quickstart setup & QC (if desired) |
| 2:30-3:30 | ipyrad part I & part II |
| 3:30-3:45 | Coffee Break* |
| 3:45-4:00 | Brief Intro/Setup Jupyter notebooks |
| 4:00-5:00 | Clustering analysis: PCA and Demographic Inference: momi2 analysis walkthroughs |
- Refreshments provided and workshop sponsored by YIBS Center for Genetic Analyses of Biodiversity Laboratory & Director Adalgisa Caccone
Additional ipyrad analysis cookbooks
- Tetrad - A Quartet-based species tree method
- Phylogenetic inference: RAxML
- Demographic analysis: momi2
- Clustering analysis: STRUCTURE
- BPP - Bayesian inference under a multi-species coalescent model
- Bucky - Phylogenetic concordance analysis
- ABBA-BABA - Admixture analysis
Acknowledgements
RADCamp Yale 2019 materials are largely based on materials from previous realizations of the workshop which included important contributions from:
- Deren Eaton
- Mariana Vasconcellos
- Laura Bertola
- Sandra Hoffberg