Welcome to RadCamp 2019 - The IBS Malaga Edition
January 8 2019
Faculty of Education Science and Psychology
Campus de Teatinos
University of Malaga
Bulevar Louis Pasteur 25
Malaga, Spain
Organisers, Instructors, and Facilitators
- Deren Eaton (Columbia)
- Isaac Overcast (CCNY)
Registration
Participation will be limited to 30 individuals. Registration for this edition of RADCamp is $85 and can be accomplished on the IBS Malaga Registation page. There are still a few slots available.
Github username spreadsheet
Please type in your full name and github username on this google sheet
Schedule
NB: This is a very preliminary schedule, so it is subject to change.
| Times | Tuesday Jan 8 |
|---|---|
| 8:30-9:00 | Check-in and refreshments |
| 9:00-9:30 | Intro to RAD-Seq data types |
| 9:30-12:00 | Setting up and QC, ipyrad part I & part II |
| 12:00-13:00 | Lunch* |
| 13:00-14:30 | Intro to Jupyter notebooks and ipyrad analysis modules |
| 14:30-17:00 | RAxML and momi2 analysis walkthroughs & small group work analysing real data |
* Lunch is not covered by the registration fee, but will be offered at affordable price for workshop attendees.
Additional ipyrad analysis cookbooks
- Tetrad - A Quartet-based species tree method
- Phylogenetic inference: RAxML
- Clustering analysis: PCA
- Demographic analysis: momi2
- Clustering analysis: STRUCTURE
- BPP - Bayesian inference under a multi-species coalescent model
- Bucky - Phylogenetic concordance analysis
- ABBA-BABA - Admixture analysis
Post-Workshop Welcome Reception
At the end of the workshop, volunteers will guide organizers and attendees to the welcome reception of the Conference:
FYCMA - Palacio de Ferias y Congresos de Malaga
Av. de Jose Ortega y Gasset 21
Malaga
through three different means:
- By bus (bus-stop is located in front of the main entrance of the building)
- A 30-minute (2 km) walk
- By taxi (volunteers will provide taxi-service phone numbers; approx. cost 8 Euro)
RADCamp IBS Malaga 2019 Group Photo
Acknowledgements
RADCamp IBS 2019 materials are largely based on materials from previous realizations of the workshop which included important contributions from:
- Mariana Vasconcellos
- Laura Bertola
- Sandra Hoffberg