Welcome to RadCamp 2020 - The Marseille Edition

October 5-7, 2020
Location: Online (But spiritually in Marseille, France)

Online content

To facilitate participation by people who may be subject to travel restrictions we will provide a Zoom feed of the instruction, with access to the chat channel for participating in the discussion. Link to come.

Organisers, Instructors, and Facilitators

Binder link

Launch a binder instance

$ wget https://radcamp.github.io/Marseille2020/binder-reinstall.sh
$ bash binder-reinstall.sh

Schedule

NB: All times are CEST (UTC+2)

Times Oct 5 Oct 6 Oct 7
11:00-12:00 Introductions/Participant slides N/A N/A
14:00-15:20 Opening Remarks, Setup/Data QC & ipyrad CLI Part 1 Jupyter notebook intro & ipyrad.analysis api for phylogenetic inference (RAxML) Assembing and using RAD locus catalogs: exploring the parameter space, Running ipyrad on HPC & other optional analysis cookbooks
15:20-15:30 Break Break Break
15:30-17:00 ipyrad CLI Part 2 ipyrad.analysis api for population genetic inference (PCA) Assisted work session

Workshop sponsors

This session is funded by the Eccorev Research Federation, the Environmental Genomics Research Group, the IMBE laboratory and the Aix-Marseille University.

Additional ipyrad analysis cookbooks

RADCamp Marseilles 2020 Group Photo

Group "photo" 1 Group "photo" 2

Acknowledgements

RADCamp Marseilles 2020 materials are largely based on materials from previous realizations of the workshop which included important contributions from: