Welcome to RadCamp 2018 - The AF-BIOTA Addition
Monday 16 - 18 July 2018
Universidade de São Paulo
São Paulo, Brasil
Instructors
- Isaac Overcast (CCNY)
- Mariana Vasconcellos (CCNY)
- Laura Bertola (CCNY)
Schedule
| Times | Monday | Tuesday | Wednesday |
|---|---|---|---|
| 9:00-12:30 | Cluster basics and ipyrad part I | Jupyter notebook setup, Clustering analysis: PCA | Demographic anaylsis (momi2) |
| 12:30-14:00 | Lunch | Lunch | Lunch |
| 14:00-17:00 | ipyrad part II | Clustering analysis: Structure & Phylogenetic inference: RAxML | Assisted work session (hack your own data) |
Additional ipyrad analysis cookbooks
- Tetrad - A Quartet-based species tree method
- BPP - Bayesian inference under a multi-species coalescent model
- Bucky - Phylogenetic concordance analysis
- ABBA-BABA - Admixture analysis
RADCamp 2018 AF-Biota participants
