Welcome to RadCamp 2020 - The Lisbon Edition
January 22, 2020
Campus da FCUL
C2 building
Room 2.2.16
Lisboa, Portugal
Organisers, Instructors, and Facilitators
- Isaac Overcast (Ecole Normale Superieure)
- Francisco Pina Martins (Universidade de Lisboa)
Registration
Participation will be limited to 32 individuals. Registration for this edition of RADCamp is free. Please fill out this brief registration survey, so we can get a better idea of who will attend:
Register for RADCamp Lisbon 2020
Schedule
NB: This is a very preliminary schedule, so it is subject to change.
| Times | Wed Jan 22 |
|---|---|
| 08:30-09:00 | Check-in and refreshments & Intro to RADSeq |
| 09:00-10:00 | ipyrad Assembly: Intro to CLI & RADSeq QC |
| 10:00-10:15 | Coffee Break |
| 10:15-11:00 | Quickstart setup & ipyrad part I |
| 11:00-12:30 | ipyrad part II & ipyrad Analysis: Brief Intro/Setup Jupyter notebooks |
| 12:30-13:30 | Group Photo & Lunch |
| 13:30-15:30 | Clustering analysis: PCA & Demographic Inference: momi2 |
| 15:30-15:45 | Coffee Break |
| 15:45-17:00 | Clustering analysis: STRUCTURE |
- Refreshments provided and workshop sponsored by:
Additional ipyrad analysis cookbooks
- Tetrad - A Quartet-based species tree method
- Phylogenetic inference: RAxML
- BPP - Bayesian inference under a multi-species coalescent model
- Bucky - Phylogenetic concordance analysis
- ABBA-BABA - Admixture analysis
Group Photos
Acknowledgements
RADCamp Lisbon 2020 materials are largely based on materials from previous realizations of the workshop which included important contributions from:
- Deren Eaton
- Mariana Vasconcellos
- Laura Bertola
- Sandra Hoffberg
- Natalia Bayona Vasquez